Pumpkin Swirl Muffins
If you adore the cozy flavors of fall wrapped up in a tender, moist bite, these Pumpkin Swirl Muffins are about to become your new favorite treat. Each muffin bursts with warm spices and rich pumpkin, perfectly complemented by a luscious, creamy swirl of sweetened cream cheese that dances through every bite. They are not only a feast for your taste buds but also a comforting hug in muffin form, making them ideal for breakfast, a snack, or even dessert. Trust me, once you try these Pumpkin Swirl Muffins, you’ll want to bake a batch every season.

Ingredients You’ll Need
This recipe brings together a handful of simple, yet essential ingredients that create a symphony of flavors and textures. Fresh spices give the muffins their signature warmth, while the pumpkin puree lends moisture and that gorgeous autumnal color. The cream cheese swirl adds a touch of tangy sweetness, making every bite irresistible.
- All-purpose flour: The base that gives the muffins structure and softness.
- Baking soda: Helps the muffins rise beautifully for a light texture.
- Ground cinnamon: Brings warm, sweet spice to every bite.
- Ground nutmeg: Adds depth and a subtle nutty warmth to the spice mix.
- Ground cloves: Provides a hint of aromatic boldness to balance the other spices.
- Salt: Enhances flavors and balances sweetness.
- Granulated sugar: Sweetens the muffins with a subtle crunch.
- Brown sugar: Adds moisture and a rich, caramel undertone.
- Vegetable oil: Keeps muffins moist without overpowering flavors.
- Canned pumpkin puree: The star ingredient, infusing the muffins with natural sweetness and velvety texture.
- Eggs: Bind ingredients together and contribute to a tender crumb.
- Vanilla extract: Amplifies the muffin’s aroma and flavor.
- Cream cheese: Creates the decadent swirl that adds creamy richness.
- Egg yolk: Enriches the cream cheese mixture for smoothness.
How to Make Pumpkin Swirl Muffins
Step 1: Preheat Your Oven and Prepare the Pan
Get your oven heating to 375°F (190°C) and line a 12-cup muffin tin with paper liners or lightly grease it. This simple first step ensures your muffins bake evenly and release effortlessly.
Step 2: Mix the Dry Ingredients
In a medium bowl, whisk together the flour, baking soda, cinnamon, nutmeg, cloves, and salt. Combining these now spreads the warm spices evenly throughout the batter for a consistent flavor in every bite.
Step 3: Combine the Wet Ingredients
In a large bowl, whisk granulated sugar, brown sugar, and vegetable oil until well blended. Then add the pumpkin puree, eggs, and vanilla extract, mixing until everything is smooth. This mixture is the heart of your muffins, packed with moisture and those beautiful fall flavors.
Step 4: Bring Dry and Wet Mixtures Together
Gradually add the dry mix to your wet ingredients, stirring gently until just combined. Be careful not to overmix here; a few lumps are okay. Overworking the batter can make the muffins dense rather than light and fluffy.
Step 5: Prepare the Cream Cheese Swirl
Beat softened cream cheese with sugar, egg yolk, and vanilla extract until smooth and creamy. This luscious mixture will swirl through your pumpkin batter, adding a dreamy creaminess and a touch of tangy sweetness.
Step 6: Assemble the Muffins
Spoon the pumpkin batter into your muffin cups, filling each about halfway. Add a generous dollop of the cream cheese mixture on top. Then use a toothpick or skewer to gently swirl the cream cheese through the pumpkin batter, creating a beautiful marbled effect on the surface.
Step 7: Bake and Cool
Pop your muffins into the oven and bake for 18 to 22 minutes, or until a toothpick inserted into the center comes out clean. Once baked, allow the muffins to cool in the tin for 5 minutes before transferring them to a wire rack to cool completely—this resting time helps set the texture perfectly.
How to Serve Pumpkin Swirl Muffins

Garnishes
For extra charm, sprinkle a little cinnamon sugar on top just before baking or add a dusting of powdered sugar once the muffins have cooled. A small pat of butter or a drizzle of honey can also elevate the experience, melting beautifully over the warm surface.
Side Dishes
These muffins pair wonderfully with a cup of hot coffee, chai tea, or even a creamy latte for a perfect fall morning. For a fuller brunch, serve alongside fresh fruit, yogurt, or scrambled eggs to balance the sweet, spiced notes of the Pumpkin Swirl Muffins.
Creative Ways to Present
Try serving the muffins with a dollop of whipped cream or mascarpone topped with a sprinkle of toasted pecans for an elegant twist. You can also slice them in half and turn them into mini pumpkin cream cheese sandwiches for a fun spin that kids and adults alike will adore.
Make Ahead and Storage
Storing Leftovers
Store any leftover Pumpkin Swirl Muffins in an airtight container at room temperature for up to three days. Keeping them sealed helps retain their soft texture and rich flavor without drying out.
Freezing
These muffins freeze beautifully. Wrap each muffin individually in plastic wrap and then place them in a freezer-safe container or bag. They’ll keep for up to three months, allowing you to enjoy a taste of fall anytime you crave it.
Reheating
To refresh frozen muffins, thaw them at room temperature and warm them briefly in the oven at 325°F (160°C) for about 10 minutes or in the microwave for 20-30 seconds. The gentle heat brings back their soft crumb and creamy swirl perfectly.
FAQs
Can I use fresh pumpkin instead of canned pumpkin puree?
Absolutely! Fresh pumpkin puree can be substituted if you roast and blend it until smooth. Keep in mind, fresh puree can have a bit more moisture, so you may need to slightly adjust baking time or flour amount if the batter seems too wet.
What’s the best way to soften cream cheese quickly?
The easiest trick is to microwave it for 10-15 seconds on a low setting, just enough to soften but not warm it. Alternatively, leaving it out on the counter for about 30-60 minutes usually works well.
Can I make these muffins vegan or dairy-free?
Yes, by swapping the cream cheese for a dairy-free alternative and using flax eggs or commercial egg replacers, you can make fun and flavorful vegan Pumpkin Swirl Muffins. Just expect slight changes in texture and flavor.
How can I tell when the muffins are perfectly baked?
Look for lightly golden tops that spring back when pressed and use the toothpick test—when inserted into the center, it should come out clean without wet batter clinging to it.
Will adding the cream cheese swirl affect baking time?
Not significantly. The cream cheese swirl is a small addition and will bake along with the muffin batter. Just keep an eye on them around the 18-minute mark to avoid overbaking.
Final Thoughts
There is something so wonderfully satisfying about biting into a warm, spice-kissed muffin with that decadent cream cheese swirl melting softly inside. These Pumpkin Swirl Muffins are a true celebration of autumn’s best flavors, made simple and accessible for any day you want to add a touch of sweetness and warmth. Go ahead and make a batch—you’ll be glad you did, and so will everyone lucky enough to share them with you!
PrintPumpkin Swirl Muffins
Deliciously moist Pumpkin Swirl Muffins featuring a perfect blend of warm spices and a creamy, tangy cream cheese swirl. These muffins are ideal for autumn breakfasts, snacks, or holiday treats, combining the rich flavors of pumpkin and a luscious cream cheese topping for a festive and comforting bake.
- Prep Time: 15 minutes
- Cook Time: 20 minutes
- Total Time: 35 minutes
- Yield: 12 muffins 1x
- Category: Breakfast, Snack, Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
For the Muffins:
- 1 3/4 cups (220 g) all-purpose flour
- 1 tsp baking soda
- 1 tsp ground cinnamon
- 1/2 tsp ground nutmeg
- 1/2 tsp ground cloves
- 1/2 tsp salt
- 1 cup (200 g) granulated sugar
- 1/2 cup (100 g) brown sugar, packed
- 1/2 cup (120 ml) vegetable oil
- 1 cup (240 g) canned pumpkin puree
- 2 large eggs
- 1 tsp vanilla extract
For the Cream Cheese Swirl:
- 6 oz (170 g) cream cheese, softened
- 1/4 cup (50 g) granulated sugar
- 1 large egg yolk
- 1/2 tsp vanilla extract
Instructions
- Preheat Your Oven: Preheat the oven to 375°F (190°C). Line a 12-cup muffin tin with paper liners or lightly grease to prevent sticking.
- Mix the Dry Ingredients: In a medium bowl, whisk together the all-purpose flour, baking soda, cinnamon, nutmeg, cloves, and salt. Set this mixture aside for later.
- Combine the Wet Ingredients: In a large bowl, whisk the granulated sugar, brown sugar, and vegetable oil until fully combined. Add pumpkin puree, eggs, and vanilla extract, mixing until smooth and homogenous.
- Combine Wet and Dry Ingredients: Gradually add the dry ingredients to the wet mixture, stirring gently until just combined. Avoid overmixing to maintain a light and tender muffin texture.
- Prepare the Cream Cheese Swirl: In a small bowl, beat the softened cream cheese, granulated sugar, egg yolk, and vanilla extract until smooth and creamy, free of lumps.
- Assemble the Muffins: Spoon the pumpkin batter into the prepared muffin cups, filling each about halfway. Add a generous dollop of the cream cheese mixture on top of each muffin. Use a toothpick or skewer to swirl the cream cheese gently into the pumpkin batter, creating a beautiful marbled effect.
- Bake: Place the muffin tin in the preheated oven and bake for 18 to 22 minutes, or until a toothpick inserted into the center of a muffin comes out clean, indicating they are fully cooked.
- Cool: Let the muffins cool in the tin for 5 minutes. Then transfer them to a wire rack to cool completely before serving to enjoy the best texture and flavor.
Notes
- Do not overmix the batter to keep muffins light and fluffy.
- The cream cheese should be softened to blend smoothly and create a perfect swirl.
- Use canned pumpkin puree, not pumpkin pie filling, to control sweetness and spices.
- Ensure the oven is fully preheated to achieve even baking.
- Store muffins in an airtight container at room temperature for up to 3 days or freeze for up to a month.
Nutrition
- Serving Size: 1 muffin
- Calories: 280 kcal
- Sugar: 23 g
- Sodium: 210 mg
- Fat: 14 g
- Saturated Fat: 5 g
- Unsaturated Fat: 8 g
- Trans Fat: 0 g
- Carbohydrates: 34 g
- Fiber: 2 g
- Protein: 4 g
- Cholesterol: 55 mg
Keywords: pumpkin muffins, cream cheese swirl, fall recipes, autumn baking, pumpkin spice, breakfast muffins, moist muffins